rs30290437 SNP Detail

Summary

• ID
  rs30290437
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52746220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCCCCTG CACACTCCCA
  GAGCAGGGGT CACCAGCCCT GTCAAAGTGG TGTTTCACAA GTCAAGGCCA GCTACTGAAA
  TTCCTTGAGA AAAGAGGACA GATTCCCCTT TCTATACTGA AAGGGGACTT TCTGGAGTGA
  CAGTGGTGAC TTTGCAAGAG TTTTGATGTA GGAAGCATGG CCTAATAGAG TAAGTAAAAG
  M
  AATGAGAGTG ATGCTCTTAG AGCCTGCCCC TGGAAATGGA TTTCCTGAGA GGAATGAGAG
  TCAGGAGAAA GTGAACAAAC TTTAAACTGC TCAAGGAACA AGAGGCAAGC AGAAATCCTG
  GCCCTGTGTA CGCTTTACAC ATACAGAGCA CACCCTATGT ATGATATGAA AATAGTATCT
  GAAAGCAAGG CAGCATGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46932500	NES10828406	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30290437					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932500	NES10828406	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52746220 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	within coordinates
Gm65967	predicted gene, 65967	1188 bp upstream
Rr576588	regulatory region 576588	1742 bp distal
Rr576589	regulatory region 576589	1362 bp proximal
Rr576590	regulatory region 576590	1583 bp proximal