rs30286987 SNP Detail

Summary

• ID
  rs30286987
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52743286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCATCGGG GCAGCAGCTG
  CCAGCAAGAA GGGCATGGAT GGAGCCTGAA GAGGCTTCAT AGATGCTTGA GAGATCCCTC
  CAGCGAGGCT CAGCCGTAAC TGAAGGAGCT TCAGGGGAAA TGGAGTGTGC CGACATAGGC
  AAGTGAATGA AAAAAAAATG GTGCTGTGTG GGGCTTTTCC TGTGGGTTTT AAGGATCTTC
  S
  GTCCAACCAT TTAACTGTAA GAAACCTATA TAGGCTGGAG TATCAAGGTA CATGCAATGC
  TAACACGTGA GAGGCTGAGG GAGGATGCTA AGTTCAAGTC TAGACTGATA TCTGCTGCCT
  CCCCTCCATA TATATGTATA TATAAAGTAT ATTATGTATA ATCGCATATA ATCATATACA
  TGGTGCATTA AAAAGTGCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46932458	NES10828492	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30286987					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932458	NES10828492	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52743286 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	200 bp downstream
Rr576588	regulatory region 576588	1007 bp proximal