rs30286032 SNP Detail

Summary

• ID
  rs30286032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52743149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATTGCCT TCCCAGACAC
  CCAGTGAGTG CTGGATTCAC AGAAGAGGCC CACGATGCAG GTCAGCAGAC AAAAATCAGT
  ATTATCACCA AAGATCACAG CCCTGGTGAC AAAGGAAAAG AGCATTCTCT CTGGTGTGAC
  CATCGGGGCA GCAGCTGCCA GCAAGAAGGG CATGGATGGA GCCTGAAGAG GCTTCATAGA
  Y
  GCTTGAGAGA TCCCTCCAGC GAGGCTCAGC CGTAACTGAA GGAGCTTCAG GGGAAATGGA
  GTGTGCCGAC ATAGGCAAGT GAATGAAAAA AAAATGGTGC TGTGTGGGGC TTTTCCTGTG
  GGTTTTAAGG ATCTTCCGTC CAACCATTTA ACTGTAAGAA ACCTATATAG GCTGGAGTAT
  CAAGGTACAT GCAATGCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46932452	NES10828490	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	T	C		C	C		T
ss135178637	ENSMUSSNP4352001	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T
ss320765394	CHEV_3_52639650	CHEVERUD	SCREENING_POP	f	SNP									C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30286032					SNP	C	T	C	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932452	NES10828490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52743149 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	337 bp downstream
Rr576588	regulatory region 576588	1144 bp proximal