rs30285531 SNP Detail

Summary

• ID
  rs30285531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52787150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCACGTT TGTCACAGAG
  AAAAAAAAAA AAAAAAAAAA AACTAACATA GATTCTTAAC CTGAATGGGA AGGGAAATCA
  GAGCAAACTT CTTTGGGTCC TTGTTTCTAT TTAATGAAAA ATTAAAGTAC ACTTCAGCTT
  AATGGCATCA TTTTATTAAT AACTCATATA CAGCAGGGGC ATGAATATCG GAGTGGTTCA
  Y
  GGTATGAAGC CATCAGTGTG CGCAGGATCG CCGATGGCTG AAGGAGGCTC TGCTCTGACT
  GTAGATGGCA AGGGGCCAGA GTGGAGAGTC GTGAAGACTT CTGCTTAGCT GTATGATGTA
  GAAATGGTCC GAGCCTTGCT TTCTCTAATT ACAAAGCAGG GTGAACTTTA AATCTGGCAG
  GGACAAGCCA ACAGCTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46933361	NES10825728	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T	C	C	C	T		C	T	T	C		T
ss135178991	ENSMUSSNP1491636	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320765664	CHEV_3_52683651	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30285531					SNP	T	T	C	T	T	T	T	C	C	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46933361	NES10825728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52787150 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	911 bp distal
Rr576596	regulatory region 576596	7 bp proximal