rs30285525 SNP Detail

Summary

• ID
  rs30285525
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52786692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTGCCTT CTGGGTACCT
  GCCTGTTGTG TGGGACTGTC TTCGAAGCCA AGCAGCCACC ATCTTGGGGA GCTAGGGTAT
  CCCAGCTGGG TTTGTTAGCT GTTTAGACAT CATCATGGAT GGGTAGGGAG GGTCACTAGG
  TATTACCACC TAGTACCATC TGCTGTATGA AACTTTGGTC TCAGGGAGAA GCTAAAGCAG
  W
  CAGACTGGAG ACGACAATGG ACAATGGTCT CCATCTATGA GTCATGGGGA GCTCTCTTCC
  TTACAGGGTG AGAGCTTTCC TCACGTTTCC CCTTGGGCAG AGAAGCACCC ACAGCCCTAT
  AAGGAAACCC TCACCTACTC TCTGTCTGGA AGCCCATGAA GCTCATTGGC TCCTATAAGC
  AAACCTTAGT GGAATTGTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46933355	NES10825724	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	A	A	A	A		A		A	A	A	A		A
ss135178988	ENSMUSSNP2933596	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
ss320765658	CHEV_3_52683193	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30285525					SNP	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46933355	NES10825724	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52786692 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	453 bp distal
Rr576596	regulatory region 576596	465 bp proximal