rs30284682 SNP Detail

Summary

• ID
  rs30284682
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52786462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCCTTTG TAGCCTACTT
  ATTCTTTAAA GCTGCCTTAG CTCTTTAAAC GTATTAGTAT GAAACAATTA AAACACCTTC
  ACCAAGCGCA GTTTGTTTTG TAGGAAGAAC GATGGAGCTG ATGACCGGTT ATCTGGCTCC
  TGAGTCCTGG TTCAGCATTT AACCAGCGCT GTGATTTTTC TTTTTCTTGA AGTTTCCGGT
  K
  TTAGCGTTCT CATGGGACAA CATTAAATTA GGTTGCCTTC TGGGTACCTG CCTGTTGTGT
  GGGACTGTCT TCGAAGCCAA GCAGCCACCA TCTTGGGGAG CTAGGGTATC CCAGCTGGGT
  TTGTTAGCTG TTTAGACATC ATCATGGATG GGTAGGGAGG GTCACTAGGT ATTACCACCT
  AGTACCATCT GCTGTATGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46933352	NES10825722	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	T	T	G	G	G	T		G	T	T		T
ss135178985	ENSMUSSNP3953762	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320765654	CHEV_3_52682963	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30284682					SNP	T	G	T	T	T	T	G	G	G	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46933352	NES10825722	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52786462 () rs orientation: forward

Symbol	Name	Function Class
Rr576595	regulatory region 576595	223 bp distal
Rr576596	regulatory region 576596	695 bp proximal