rs30283998 SNP Detail

Summary

• ID
  rs30283998
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52742322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCTATA CTTAAAATGC
  CAAGCATTGT GAAATCAAAG GAAAAATTAG ACACACGCAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACATAC ACACATACAC ACTTACATCA CGAACACATG
  CATACAAGCA CGCACAATCA CGGTGGAGAA ACTACCATTT CTAACTCCCA AATTAGAGGT
  W
  ACAAAAGCAA ACACTGCTTT CATTCATTAA GCCAATAATA AAGTTTTATT CATACCAACA
  AATTCACATT AACAAAATAC CTTCTGCCTG TTTGCTGCAT CTCTAAAATA ATTTGTTGGA
  TGAAAGCGAT GGATGGAATG TCTCTGTTTT TATGAAGTGT GTAAGCAGTG TGGATTGTCA
  CAGGCACCAC TGAAACTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45524208	mCV24465056	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					A		A
ss46932428	NES10828476	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T	T		T	A	A	T		T	T	T	T		A
ss135178631	ENSMUSSNP5497277	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
ss320765391	CHEV_3_52638823	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30283998					SNP	T	T	A	T	T	T	T	A	T	A	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932428	NES10828476	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52742322 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	1164 bp downstream
Rr576588	regulatory region 576588	1971 bp proximal