rs30282247 SNP Detail

Summary

• ID
  rs30282247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52740586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCCTTC CCCTTTGGAC
  AGTAGGTCAC CCTGCCTTTC TGGCCCTCAA GTTTACGACC TGCAATGAAG AAAGGCAAAG
  ACTGTCTACT GGCCAGGCCT GTGGACACAT TTAGTGTTCA GGAGGCAAGC AATTACGATT
  CCAGTTTTAC AAGAGACCCA AGTTCCCCAA GTCAGTCCAA TTTTCAAAAC TAGGCTTCAC
  Y
  ATGATGTGTC ATCTTCTATT TATTTAACAA CAACCAAAAA AAACCCCTAC TTTTTCAAAG
  TTTATTTGTT TTCACTATAA CCAACTCCAA AAGCACACTC AGATGTGTTT TATCACACAG
  GCGACCACGC AGAAGACTTT TAAACTCACC GGTTTCTATT GCAGAGCCGA CTGAGTTTAT
  GGGAAATTGC ACTAATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46932410	NES10828546	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	C	T		T	T	T	T		C
ss320765364	CHEV_3_52637087	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30282247					SNP	T	C	T	T	T	C	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932410	NES10828546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52740586 () rs orientation: forward

Symbol	Name	Function Class
Rr576587	regulatory region 576587	838 bp distal