rs30281428 SNP Detail

Summary

• ID
  rs30281428
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121757539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTGTTGT TATTTATTCC TCCACTTTAT CTTTTAAGGA
  TTTCTTTTCT ATTGAAATAG TGCCTCACTT GGCAAACCAG GCTGGTCTCG CATGGGTGTA
  M
  CTGCATGCAC CACTACCCTC TTTTAAGATT TAAATCTAGA CATTAAAAAA TATTTGTTCT
  CCTGCAACTT TTTAAGAGAT TTGTTTATTT TGTTTATAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45495365	mCV25244706	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	C
ss46932909	NES10676081	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A			A		A		C
ss135732781	ENSMUSSNP1813795	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						C
ss320907358	CHEV_3_121666808	CHEVERUD	SCREENING_POP	f	SNP											A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30281428					SNP	A	A	A	A	A	A	A	A	C	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932909	NES10676081	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121757539 () rs orientation: forward

Symbol	Name	Function Class
Arhgap29	Rho GTPase activating protein 29	Intron
Rr584209	regulatory region 584209	117 bp proximal
Rr584210	regulatory region 584210	353 bp proximal
Rr584211	regulatory region 584211	462 bp proximal