rs30281425 SNP Detail

Summary

• ID
  rs30281425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121757306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTTTTAA AAAAAAGAAT GTTAAAAAAT GAATACATAA
  AATAAATAAA AATAATTTAG GAGATAATAG AGTTTTATTT CATTGAAAGT TCAGATATTG
  Y
  AGTTTATTTC ATTGGCTTGA GATTCCATGT TTCAAATACT ACTATCCCTT GCTTTGTGAA
  AACTATCTAT CTAACTCCCC TCCCCACTAC CACACACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45533396	mCV25244716	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss46932906	NES10676079	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C		C	T		T
ss135732778	ENSMUSSNP5213860	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss320907357	CHEV_3_121666575	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30281425					SNP	T	T	C	C	C	C	C	T	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932906	NES10676079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121757306 () rs orientation: forward

Symbol	Name	Function Class
Arhgap29	Rho GTPase activating protein 29	Intron
Rr584209	regulatory region 584209	350 bp proximal
Rr584210	regulatory region 584210	586 bp proximal
Rr584211	regulatory region 584211	695 bp proximal