rs30281318 SNP Detail

Summary

• ID
  rs30281318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121662813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACTTTGCA GATCTCTGGG ATATCTGCTG CCCATCTGTC
  CATGGCACTA ACTCATCCAA TAACTCTCAT ATCCAAATGG ACAGCTCACC TCAGTTTCCT
  Y
  CTTGAGCCCC AAACCAGAAA CCTATCTGGA AACCTTTGCA GGCACACACG GAGGTGTGCT
  TCTATGATGA TTCTAAATCC AGTTAAGTTG AAAATTGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45431520	mCV22798716	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss46931520	NES10681943	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	C	C		T	C	C		C
ss135730725	ENSMUSSNP1848834	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							T
ss320906531	CHEV_3_121572082	CHEVERUD	SCREENING_POP	f	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30281318					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931520	NES10681943	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121662813 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	within coordinates
Gm65480	predicted gene, 65480	1865 bp upstream
Rr584187	regulatory region 584187	1375 bp distal
Rr584188	regulatory region 584188	564 bp proximal
Rr584189	regulatory region 584189	1624 bp proximal