rs30281315 SNP Detail

Summary

• ID
  rs30281315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121662507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGACTG TGTCTTAGTT
  TTCAAATATT CAAAATAATG GAAATAATAA ATCTTGTGGG CTATGATCAT CCTTCTATAG
  AAAGAGGCTG GGGTATAGCT CAGTGGTACT GCACATGCAT AGCATGTTCT AGGCCTTGAG
  CTCAATGAAT AATACTAAAT AATGATGACA ATTCCACCAG TCCCTGATGA ACAGACACGC
  Y
  GTCCAGTGCA CTCATTCTGT TTCATACAAT TCTCAACTAC ATTCTCATCA ACAGGACTCA
  TCCTACCTGC AGAAGTCTGT CATCGTCACA GCATCTATAA GAAAGCAGCA AGCCCCCATC
  TGTGGTTTCC TCAACTCTCT CTCTAGCAGA CTCCCCAGGT CTCTGGATTC CCACGGAATG
  GCAGGTATCA TTCACACTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46931517	NES10681942	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30281315					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931517	NES10681942	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121662507 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	within coordinates
Gm65480	predicted gene, 65480	1559 bp upstream
Rr584187	regulatory region 584187	1069 bp distal
Rr584188	regulatory region 584188	870 bp proximal
Rr584189	regulatory region 584189	1930 bp proximal