rs30281295 SNP Detail

Summary

• ID
  rs30281295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52740194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAGATTG TTCCTGTAAA
  TTAGCGGCTC TAGCTGACAG AGCTATGAGT GCTTTTGGAA AGCTTCTCTA TCAGTGTCAA
  AATCAAAGGC AGAGGGCGCG GAGAAGGCTG GGTTTAGCAG GGTGGCATTT TAGATGTGGA
  TTTATCCAAA TGAAGTGCAC ACTTGCTTTT CCTGTCTATC TTTGTAAGCC TTTGTTCTTT
  Y
  TGTACTTTGA AGTATATCGG GGTTGGTAGT TTTAACAAAA GTCCCATGGA GAGGTCTTCT
  GGTAGGTAGA CATACAAAGT TTGAGGTTTG GGGCCGATTA CATGATGTGG AAAAAAACAG
  AACAGAATTT ATAAGTCAAA ATCTGCCACA AGGTAGTGTG GAAATTTGGG GAATCGAATT
  AGTAATAAAT CCCAAGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss45434850	mCV24465019	ABI	CRAMUS_MOUSE	f	SNP		C	T			T	T
ss46932398	NES10828529	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C		T	T	C		C		T
ss320765361	CHEV_3_52636695	CHEVERUD	SCREENING_POP	f	SNP										C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs30281295					SNP	C	C	T	C	C	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932398	NES10828529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52740194 () rs orientation: forward

Symbol	Name	Function Class
Rr576587	regulatory region 576587	446 bp distal