rs30281160 SNP Detail

Summary

• ID
  rs30281160
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126068134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCTGAC CACCTTACTG
  TCAGCATTAG TCACACTGTT GATTCTTATT CTGATCAGGT AACACTGGGA CCCTGCATAA
  GCAAGTGCAT GGCTAACTTA TCTACTGATA CTTAGGATCA ACTATGCCTG AACGCCACCC
  AATGGAACAA ATCAACAGTT TGACTCATGG TCATAAAGTC ATGGGGAATA TGCCAGGGCA
  S
  AGCAGTGCAA AGGTCCCTTC ATCTTGTATT CTTGATTTTT CAGCCCCTTT CAGGTTTAAC
  TAGTGTTTGA TCTCCCTGAT AGACAATCAC ATTGATCAGT ACCCAACTCT ATCTTTGCAA
  CCCAAGGTCA AGATGCCCTA GCTAATTTAT CTTAGCTGCT GTTAATCTGC TTGCTTATGG
  AAACCTTGTC CTGTAGCTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45413970	mCV23909569	ABI	CRAMUS_MOUSE	f	SNP		G					C		C
ss46951988	NES10690954	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	C	G		C	C	C		G	C	C	C		C
ss135827533	ENSMUSSNP1547811	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							C
ss320943734	CHEV_3_125977403	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30281160					SNP	G	G	C	G	C	G	C	C	C	C	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46951988	NES10690954	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126068134 () rs orientation: forward

Symbol	Name	Function Class
Rr375705	regulatory region 375705	1434 bp downstream
Rr584628	regulatory region 584628	1640 bp proximal