rs30280919 SNP Detail

Summary

• ID
  rs30280919
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52706925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGTTAC AGGAGACCTG
  TACTTACCAC CAGGAAGACT TTCAAATGTA ACATGCTCTC ATTTTGAAAA CATTTATTGC
  TGATTGCTAT CAGTGTTCAT TTTCAGATGC CTGCCTTCAG GGAGTAGACC TGTCCAAATA
  AGACCGGCCC ATCTTGCCCA CTGAGGCGAT AGTAGTCAAA GGTCAGATTT TACTTTCATC
  R
  AGTTTTGTTC TTGTTTCTGC CACCTGTCGA CATCTATCTT TCGCTAGTGG CTTATCATCT
  TTTTAAAGAG ATGAAATAAG ATACTTCTTT AGTGCATTGT GTATGAAGTG AAATAATGAT
  GTGACGTCAG AGAAACAACG AACAAACTGC ATGTATGAGG ATGAGATTAA AGTGCGTTGT
  TATTCTGGCT GAAAGAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46931909	NES10830136	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30280919					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931909	NES10830136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52706925 () rs orientation: forward

Symbol	Name	Function Class
Gm30292	predicted gene, 30292	1720 bp upstream
Rr576585	regulatory region 576585	1367 bp distal
Rr576586	regulatory region 576586	1126 bp proximal