rs30280299 SNP Detail

Summary

• ID
  rs30280299
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52740043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACT TCACTTACTT GCAACCATCT TTAACAATGC AAACAGGAGG AACAAGGTAA
  GATGGAGTGT TTGGGGTAGA GGTGTGCAGC AGCCAAGTGC TGTCACAATC AGCACACCCA
  AGCACCGTTT GTAATAGATT GTTCCTGTAA ATTAGCGGCT CTAGCTGACA GAGCTATGAG
  K
  GCTTTTGGAA AGCTTCTCTA TCAGTGTCAA AATCAAAGGC AGAGGGCGCG GAGAAGGCTG
  GGTTTAGCAG GGTGGCATTT TAGATGTGGA TTTATCCAAA TGAAGTGCAC ACTTGCTTTT
  CCTGTCTATC TTTGTAAGCC TTTGTTCTTT TTGTACTTTG AAGTATATCG GGGTTGGTAG
  TTTTAACAAA AGTCCCATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45475467	mCV24465008	ABI	CRAMUS_MOUSE	f	SNP		G	T					T	T
ss46932392	NES10828525	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G	G	G		T	G		G	G	G		T
ss135178586	ENSMUSSNP6186137	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
ss320765358	CHEV_3_52636544	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30280299					SNP	G	G	T	G	G	G	G	T	T	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932392	NES10828525	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52740043 () rs orientation: forward

Symbol	Name	Function Class
Rr576587	regulatory region 576587	295 bp distal