rs30279473 SNP Detail

Summary

• ID
  rs30279473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121661837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGAAG AGCATTCCAG
  CCCTCTGTGA GAGCAGCAGG CACTTTTAAC TCCAGAGGTG TCTGTCTCTC CAGCCGAAAA
  GTTTAATAAT ATAAAATCTT TAGATATATG AGTGTGTTTA TATATGTATA TCTATATATG
  TAGATGGTTT CTAAGACATC CTTGAAGAGC TTTTTCTTTC CTCCATAGTA AGAAGATGCA
  Y
  TTAAAAGATA CATAAATACA TCTCAGTTCC TGCCAGACAG ACCTTAAGAG CAAAGAGTCT
  CTCCAGAGAG ATGGAATTTG CCCCACACAG TAGATGTCTT TCCAAAAGCT TCCATTATAT
  CAAGATGCTT CAGATCCAGC ATCTGTGAGA TGAACTGTGA GCTAGACACT CACATGTTAA
  CCTCTGACTC CCTTTGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46931505	NES10681983	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30279473					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931505	NES10681983	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121661837 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	within coordinates
Gm65480	predicted gene, 65480	889 bp upstream
Rr584187	regulatory region 584187	399 bp distal
Rr584188	regulatory region 584188	1540 bp proximal