rs30279142 SNP Detail

Summary

• ID
  rs30279142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14297740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT AACTACGACT AAGTATTAAG
  Y
  GTTCACTAGT GCACAACACT TGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39168914	mCV25068960	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss138987211	ENSMUSSNP513195	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30279142					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14297740 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6157	CpG island 6157			415 bp distal
Pdhb	pyruvate dehydrogenase (lipoamide) beta			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr389295	regulatory region 389295			365 bp downstream
Rr487856	regulatory region 487856			1912 bp distal
Rr487857	regulatory region 487857			1793 bp distal
Rr487858	regulatory region 487858			982 bp distal
Tssr127398	transcription start site region 127398			925 bp downstream
Tssr127399	transcription start site region 127399			953 bp downstream