rs30278605 SNP Detail

Summary

• ID
  rs30278605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52748448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACAGCT TTTAGCTTCC
  CTTATTCCAT TAGTGCTTCA AATAGTGAGT CAATACAACC TGTAATTTAC TAGTCGGTAA
  AATTTGATAA ATTGTGTTTT CATATATATT AGTGGTTTTA CGTTTAACAA AGTCCATCAT
  ATGGAATTAC CACTATGGTT AAAAACATTA TTTTATATTT TGAGAGGTAG GGGCTTCCCT
  R
  TGCTTAAAAT GCCTACCCTG TGCCTTTTAA AATTCTGGTA TAGCATTCTG GTACTTCAGA
  CAGCCTCCTG CAATAAGGAA TTGTCCTCTT TCCTCTTCAC TGGTCAAGAA AGCTGCACTA
  TTACCCAATA CTGATACATA ATATCCTTTA TAACAAAATC AAGACTCTGG CTACCAATCC
  CCAAAGACCC TAGGATTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46932566	NES10828304	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G		G
ss320765413	CHEV_3_52644949	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30278605					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932566	NES10828304	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52748448 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	635 bp upstream
Gm65967	predicted gene, 65967	444 bp downstream
Rr576589	regulatory region 576589	646 bp distal
Rr576590	regulatory region 576590	145 bp distal