rs30278222 SNP Detail

Summary

• ID
  rs30278222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52704737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATAATAT ATGACTCTAA
  TATAACATGG TGTATAATAA ATATACAGTA TATAGCATAT AACATGACAT ATTGTATATA
  GTATATGACA TGTGATATAT TTATATGTAT AATAAATAAC ATAACATAGT ATATAAAAGA
  AAAAGATGTA CTTACTATGA GGAAACATCC CCAAAGAAGG CAAGCAAGTG GAGCTTCTGC
  Y
  CTTGAGAGAT AACAAGCCAA CTGGAGAGAC TAAACATACA CTGTGTGGAA AACAACAGTC
  TAGATCCACA GAGCGTTATA GCAGAAGGAG TAAGAAGCTC ACATGGCTAC TTTTTAAAAG
  TCGTGAGTCA GCTGTAGCCC AAGAGAGACT GCCAAACAGA AGCAAATCCA TACGAACCTG
  CACACTACCT GGCATTTACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46931882	NES10796232	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	C	C	T		C	T	C	C		C
ss320765231	CHEV_3_52601238	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30278222					SNP	T	C	T	T	T	C	C	C	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931882	NES10796232	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52704737 () rs orientation: forward

Symbol	Name	Function Class
Gm30292	predicted gene, 30292	within coordinates
Rr576585	regulatory region 576585	531 bp proximal