rs30277553 SNP Detail

Summary

• ID
  rs30277553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153365129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCGTGAG AGCAAGCATC
  TCAGGCTAGC TCCAGCCCGC AGACAGACCC TTGTTCTTTA GCCTCTTGCT GTGTCCCTCA
  GCAAATGTCA CTCAGCACAC CAGACAAGTC CTGGAGCTCC CTATGACCGG GTCAGTTATA
  ATATGTGGAC GACACTTGCA CAAGCCTGCC TGCTACAGCC TAGGTAGCCA CAGGTGACAA
  R
  TGGAGAACAG AGAGGATGCA GATCAGGCAG GGCAAGAAGG GCTAGCCCAG TCAGGACGAT
  GCTTACCTTG CGAACATACG GGGCGGAATT CATCCCCAGA GCATATTACT AATGTGATGG
  ACCTTTGTTA CCAAAGAACT GTACTTAGAA AAGGAAACAA ACTTCAGAGA AATAAAAATC
  CCAGCAACAG CCCCTGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45414038	mCV24207562	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss47467636	NES10329136	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	G	G	G	G	G
ss136110570	ENSMUSSNP4252737	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30277553					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467636	NES10329136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153365129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			632 bp distal
Rr587720	regulatory region 587720			899 bp distal
Rr587721	regulatory region 587721			179 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant