rs30277489 SNP Detail

Summary

• ID
  rs30277489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52748303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAATG GAAATTAAAA
  AAAAAAAAAG TAATTACCTC TTAGCGTGTT AAAAAGTTAA GTTGAATTGC CCATTACCAT
  GGAGATGGCT TCCTGTTTAC CACACTGGTC GCCCAGCTGT TGAAGACCAG CCACCCAGCC
  AATGAAAAGA CAGCTTTTAG CTTCCCTTAT TCCATTAGTG CTTCAAATAG TGAGTCAATA
  Y
  AACCTGTAAT TTACTAGTCG GTAAAATTTG ATAAATTGTG TTTTCATATA TATTAGTGGT
  TTTACGTTTA ACAAAGTCCA TCATATGGAA TTACCACTAT GGTTAAAAAC ATTATTTTAT
  ATTTTGAGAG GTAGGGGCTT CCCTGTGCTT AAAATGCCTA CCCTGTGCCT TTTAAAATTC
  TGGTATAGCA TTCTGGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46932560	NES10828300	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30277489					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932560	NES10828300	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52748303 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	490 bp upstream
Gm65967	predicted gene, 65967	299 bp downstream
Rr576589	regulatory region 576589	501 bp distal
Rr576590	regulatory region 576590	within coordinates