rs30277457 SNP Detail

Summary

• ID
  rs30277457
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52738169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTAGTG TCCACATGGA
  GGCTAAAAAG AATAGGCTCT ATTTAAAATG CAAATTAGTT TCTAAGACCA GAGAATAGAA
  GTCACGGCAA GCTGACATCA TGTGATTATG CCATGAAGTT GGTCTTTCTT CTATAGGATA
  TGAAGAGTCT TTGAAGCATA TGACATAAAG GATAAGCATG ATAGAGTCTG AGTTTATTCA
  W
  TGGATTCACC AAACATTTGC TGAGAATCAA CTGTGTGGTT GGCATTGTGC CAACCTTGGC
  ACTAAGAGTT TAATACCCAA GAAGACAGAA ATGATCCTCG GCGGTACAGA ACCTAAATTC
  TGATGAAGAA GGAACAATAA ACAAGTGAAC TCCTAAATCA ACAGAAGAGT AGAAGAAATC
  TACATTGTTA TAAATCCTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45517971	mCV24464711	ABI	CRAMUS_MOUSE	f	SNP		T	A					A	A
ss46932359	NES10828653	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	T	T		A	A	T		T	T	T	T		A
ss135178569	ENSMUSSNP1994200	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
ss320765350	CHEV_3_52634670	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30277457					SNP	T	T	A	T	T	T	T	A	A	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932359	NES10828653	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52738169 () rs orientation: forward

Symbol	Name	Function Class
Rr576587	regulatory region 576587	1336 bp proximal