rs30277213 SNP Detail

Summary

• ID
  rs30277213
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52704056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGATTC AGGTGTCACT
  ACTTAGGTAT TTTGTTCTCC GTGATACTTA AAAATTTGCT AACTTGTTTA ATATTCTACT
  TATTTATTTT GCATATCATC TATTTTTTTT CTTACAAAAA GGCAAGCCAC TTGAAGTCAG
  GAAGTTTTGG TTATGTCCTG CAAAGTTTAA CGTGGCTTCA GACACATAAG AGGAGAGCAG
  M
  TGTTTTAATT AAATATGAAA ATGGAGCATG GGGATTAGCT TACAATGCCA TCAGAATGCA
  TGATGCTGTC TCTAGGGAGG GCACGCCTTC TGCAGGGTGT AAGGGTTCTT TCTAGCTGTA
  TCGTCACGGC AAGGAAACAC ATGGAGAGAC TCATGGCTCC AGATGTATAT GTAGAGAGGA
  TGACTTAGTT GGTCATCAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45499562	mCV22816790	ABI	CRAMUS_MOUSE	f	SNP		A	C					A
ss46931873	NES10796268	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A	A		A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30277213					SNP	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931873	NES10796268	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52704056 () rs orientation: forward

Symbol	Name	Function Class
Gm30292	predicted gene, 30292	within coordinates
Rr576585	regulatory region 576585	1212 bp proximal