rs30276671 SNP Detail

Summary

• ID
  rs30276671
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52747731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGCATA GATTATTAAG
  GTAGGGAAGA GAAAATGTGG GTGTTAGAGG GGGACCACAC CCAGGCAGCT GCCTAGGATA
  CAGGCTCTGT AGTGTATTCT AGAAGTCCCT GGCAGAGCTC GGCCTCCAAC AGAATTCTCC
  TCTGCCCTGA GACCGCCCAT CTTCTCCTTC CAGGTTGTCT CAGCAGAACT CACCGTCTTG
  K
  CTGGCCTCTT CAGCCCTGGT TCATCTTCTC ATCTGTCAGG GACCCACCTG TGGCTTTAAT
  GTGGGCCTGC CTGAGCCCCA CCCTCCTACA CCCTGTGGTT ATCGGTCCTC CACCCTGATC
  TTATCATCTG CAGGAAATCA AAACACCATG TGTGTGAGCA TAAAATTCTG TCATTTATTT
  GTGTTGCAGA CTTCAGGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46932551	NES10828290	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G		T	G	G	T		G
ss320765406	CHEV_3_52644232	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30276671					SNP	G	G	G	G	G	G	T	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932551	NES10828290	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52747731 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	within coordinates
Gm65967	predicted gene, 65967	within coordinates
Rr576589	regulatory region 576589	within coordinates
Rr576590	regulatory region 576590	72 bp proximal