rs30276665 SNP Detail

Summary

• ID
  rs30276665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52747684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGTTCT CAAGACAGCC
  TATGAATGCA GACTTGCCTG GAATTTTGAA GTGCATAGAT TATTAAGGTA GGGAAGAGAA
  AATGTGGGTG TTAGAGGGGG ACCACACCCA GGCAGCTGCC TAGGATACAG GCTCTGTAGT
  GTATTCTAGA AGTCCCTGGC AGAGCTCGGC CTCCAACAGA ATTCTCCTCT GCCCTGAGAC
  Y
  GCCCATCTTC TCCTTCCAGG TTGTCTCAGC AGAACTCACC GTCTTGGCTG GCCTCTTCAG
  CCCTGGTTCA TCTTCTCATC TGTCAGGGAC CCACCTGTGG CTTTAATGTG GGCCTGCCTG
  AGCCCCACCC TCCTACACCC TGTGGTTATC GGTCCTCCAC CCTGATCTTA TCATCTGCAG
  GAAATCAAAA CACCATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46932545	NES10828288	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30276665					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932545	NES10828288	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52747684 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	within coordinates
Gm65967	predicted gene, 65967	within coordinates
Rr576589	regulatory region 576589	within coordinates
Rr576590	regulatory region 576590	119 bp proximal