rs30275719 SNP Detail

Summary

• ID
  rs30275719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52747409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACTCTT GGACCTGGGG
  ACTTCCCAAG ACTTTGCCCT AGGCTGCTGG AGAGTCTCAT CTGTCTTCTC TGCTTGGCTG
  TACACTCACT GATGGCTAAT GGGAGCAGGC TGTAGCGTGG GAAAGGCGAA GAGGGTTGCT
  ACAGTGTTGC GGAGACTCAA CGCTAGGCAG ACTCTAGCTA CCTTTGACAG CGACAGGCTG
  Y
  TGAAGAGCAA GCGCTGCCTG CAGAGAGCTG GACTGTGGTT TGCTACTGTG GACACTGACT
  TCATTTGTTC TTATTTCTTG TTCTCAAGAC AGCCTATGAA TGCAGACTTG CCTGGAATTT
  TGAAGTGCAT AGATTATTAA GGTAGGGAAG AGAAAATGTG GGTGTTAGAG GGGGACCACA
  CCCAGGCAGC TGCCTAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46932539	NES10828284	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30275719					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932539	NES10828284	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52747409 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	within coordinates
Gm65967	predicted gene, 65967	within coordinates
Rr576589	regulatory region 576589	173 bp proximal
Rr576590	regulatory region 576590	394 bp proximal