rs30274790 SNP Detail

Summary

• ID
  rs30274790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52747255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCTGTG TATACCCTGT
  GGGCAACTCA TTTTTATCAG AATCTTTCTT CTCCTTCCTG TGTTGCCAGA ACCTTTTGGA
  CATGGGTTCT GGACCAGGAA AGACTATAGT CAGTAGAAAT GCACTTGTTG CACCCTGAAG
  CTTCTCTGGG TCCATCCAAC TCTTGGACCT GGGGACTTCC CAAGACTTTG CCCTAGGCTG
  Y
  TGGAGAGTCT CATCTGTCTT CTCTGCTTGG CTGTACACTC ACTGATGGCT AATGGGAGCA
  GGCTGTAGCG TGGGAAAGGC GAAGAGGGTT GCTACAGTGT TGCGGAGACT CAACGCTAGG
  CAGACTCTAG CTACCTTTGA CAGCGACAGG CTGTTGAAGA GCAAGCGCTG CCTGCAGAGA
  GCTGGACTGT GGTTTGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46932530	NES10828280	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30274790					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46932530	NES10828280	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52747255 () rs orientation: forward

Symbol	Name	Function Class
Gm65956	predicted gene, 65956	within coordinates
Gm65967	predicted gene, 65967	153 bp upstream
Rr576589	regulatory region 576589	327 bp proximal
Rr576590	regulatory region 576590	548 bp proximal