rs30274671 SNP Detail

Summary

• ID
  rs30274671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121654697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACGGATGGT TGTGAGCCAC CATGTGGTTG CTGGGATTTG
  AACTCAGGAC CTTTGGAAGA GCAGTCGGCG CTTGTAACCG CTGAGCCATC TCACCAGCCC
  R
  GTTTATGAAT TCTTAAAGTC TATTCAGATT AGCAGAAATG ACTTAAAAAT GTATGTTCAG
  CCACTTTGTC TTTGATAACC CTATTAAGCC TTAGCTATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss46931451	NES10682330	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A		G	A
ss320906465	CHEV_3_121563966	CHEVERUD	SCREENING_POP	f	SNP							A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs30274671					SNP	A	A	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931451	NES10682330	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121654697 () rs orientation: forward

Symbol	Name	Function Class
Gm42593	predicted gene 42593	1794 bp upstream
Gm65477	predicted gene, 65477	820 bp upstream
Rr584185	regulatory region 584185	1596 bp distal