rs30273791 SNP Detail

Summary

• ID
  rs30273791
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121664771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTACAGT ATCAACAAGC
  TGGCACAGAG TTACTATGGG AGGGAGGGGA GGAAGGCTCC TGTGCCTAGG AATGGTCAGA
  GAGAAACCTC AAGTTTCAAG TCTATGCAGC CTCCCACCCC TTTCGTCCTG ATTATTATCC
  AGAAACTCGT CACGAGGTGG TGCCTTAGGG ATTTCTGTGC AGACAATGAG CGAGAGAGCT
  Y
  CATGAATCCA GTTTTGAGAT CATCCCTTTC ATTACTCAAA TACTTCAGAT GCCTGTGACT
  AGAAGTATCA GTTTGTTCAT TTGTTTGTTT GTTTGTCTGT TTGTCATGCC AGACCGTAGG
  TGTGATTGAG CCACATAATG GCCTAGTTTC CCAAAAGTGC CAAATCTCCT TCCCACCTGG
  ATGAATAGTA ATCCATTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46931541	NES10681650	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30273791					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931541	NES10681650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121664771 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	1699 bp downstream
Rr584188	regulatory region 584188	1098 bp distal
Rr584189	regulatory region 584189	119 bp distal
Rr584190	regulatory region 584190	706 bp proximal