rs30273169 SNP Detail

Summary

• ID
  rs30273169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121663761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTCCCACA ACTCCTCCTC AGGTTCGATT AATTATTCTC
  AGGACTCAGA GAAACATTTA TATGATTGTT TTATTACAAT TAATATGTAA GAAATGCAGA
  R
  GAACAGACAT CAGGCAGGAA AATGGATTTT GAGGATTTTC TAAGGTTTTT AAGAACCTCC
  ATGTGATATG TTCAGCTATA TGAAAACTTC CTGAACCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46931529	NES10681760	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	G	G		A	G	G		G
ss135730731	ENSMUSSNP3364298	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320906545	CHEV_3_121573030	CHEVERUD	SCREENING_POP	f	SNP												G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30273169					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931529	NES10681760	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121663761 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	689 bp downstream
Rr584188	regulatory region 584188	88 bp distal
Rr584189	regulatory region 584189	676 bp proximal
Rr584190	regulatory region 584190	1716 bp proximal