rs30273166 SNP Detail

Summary

• ID
  rs30273166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121663236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCCAAA TACTGGAATT
  AAAGGCATGC GCCACCACTG CTGCCTCTGC CTGCTGCCAT CCCCACCACC CAGTGCTTAA
  AGGTTTCTTA AGATGACTGC AACACTGCAA ACCATTGTTG TTACAAAACA GGAAGGTTAG
  TGCCTTGGCT CCACAAAAGA CAGAACATCC CAGTATGGAC ATCATGCCAA AGAAAAAAAC
  R
  GTTGCTTTGG GCCCTGCATA GACTAGGGTT GCAGATCCAG CAGTCAGACT TAAAGCTTTT
  ACACCAGTTT GGGAACATCT CAGCCAGTGT TTTCCTTCAG AAAAAACCCA AACACTATTC
  AACTCCCCTC TTTCTCAGGG GCCTGAGGTT CTGTTGGGGT AAATAAGATT CTCACTCTTT
  CTCTAACTCT CACACATCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46931526	NES10681852	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30273166					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931526	NES10681852	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121663236 () rs orientation: forward

Symbol	Name	Function Class
Gm65477	predicted gene, 65477	164 bp downstream
Rr584187	regulatory region 584187	1798 bp distal
Rr584188	regulatory region 584188	141 bp proximal
Rr584189	regulatory region 584189	1201 bp proximal