rs30273129 SNP Detail

Summary

• ID
  rs30273129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121613862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAGGACA CACCTACAAG
  TAAATAAAAT GGCCCTGCCC TCTCATGATT AGCAATGTGA ACAAAGACAC AGTCAAAAGG
  GAAATGCCAT AAAAAACTGT GTTGGCTATA AAATCAAAAT TATGTATGGA TCTGAAAGAG
  GGAAAAACTA ACCTAAGCTA GGGGCTTTCC AGGAAACCAG GTTGTGGTGC CAGACGTTTA
  Y
  TGTAATTCTC ACATTAATCT TACTTCGCCA TGGCTGCCCT TGTGTGCTTA GTTCGTCTTG
  TTTGTGCACT CGGTCAGGTA CAGAGCAAAA TGACATCAGT CTTGATGTTC CATCCAGCAA
  CTCAGTGCCC AGCCATCTCT CTGTGTGATC CAACCAAACA CTCCTTCAAA ACCTCAGTAA
  TGCTCAGCCT GACTAGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46931229	NES10684885	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	C
ss135729756	ENSMUSSNP2106562	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30273129					SNP	T	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46931229	NES10684885	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121613862 () rs orientation: forward

Symbol	Name	Function Class
Rr584177	regulatory region 584177	within coordinates
Rr584178	regulatory region 584178	1522 bp proximal