rs30272582 SNP Detail

Summary

• ID
  rs30272582
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121572490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TACACAGTGC TACAGTAAGT
  W
  CTAGGACCCT CAAAATTGAC TTAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss46930767	NES10687353	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A		T	A			A
ss135729129	ENSMUSSNP5898331	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				T
ss320905803	CHEV_3_121481759	CHEVERUD	SCREENING_POP	f	SNP										T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs30272582					SNP	T	T	A	A	A	A	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930767	NES10687353	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121572490 () rs orientation: forward

Symbol	Name	Function Class
Abcd3	ATP-binding cassette, sub-family D member 3	Intron
Rr584166	regulatory region 584166	486 bp distal
Rr584167	regulatory region 584167	614 bp distal
Rr584168	regulatory region 584168	268 bp distal