rs30271452 SNP Detail

Summary

• ID
  rs30271452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27243066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGGAGAT GTAGTCCAGG
  GATGGCATGG GGACCTGAGG CAGCTGCTCA CATTGCCTCT GTAGCCCAGA AGGAGAGGTG
  AATGCTGGTG TACTAATTTG ACTTTAGAAT ATTAGTGAAT AGGCTTTAAT GATTTTCTTT
  TTTGAAACAT TGTCATGTTC TGTGACTGTG AACTTGTGAT AATTCCCCAT CAGACTCTGG
  R
  ACACTGGGAC TGTGGTAGTG GGCTACTGTG CTTGGTAGGG GACAGTTTTG TATGCAACCT
  CCAGACTTGG AATGAAGACC ACTATGTCAC AGAAGTTTGA GGGGTCAGTA ACCATAGTGA
  TATGATTAGC TAATTCAGTT GGATTTCCTA CAAAGACAAG GCAGCAGAAA GGCTTCACCT
  TCAGGGAGGT ATTTACTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45413672	mCV27552857	ABI	CRAMUS_MOUSE	f	SNP		A	G
ss60380394	NES15883737	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G	G	A	A	A	A	A	A
ss134702605	ENSMUSSNP1260071	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30271452					SNP	A	A	G	G	A	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380394	NES15883737	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27243066 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			295 bp upstream
Rr574359	regulatory region 574359			141 bp distal
Rr574360	regulatory region 574360			717 bp proximal
Rr574361	regulatory region 574361			1866 bp proximal
Tssr28607	transcription start site region 28607			508 bp downstream
Tssr28608	transcription start site region 28608			476 bp downstream
Tssr28609	transcription start site region 28609			459 bp downstream