rs30271315 SNP Detail

Summary

• ID
  rs30271315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77060129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTGCTCA GGAATTACCA
  GGTCCTCTGA AGCTGCTGCA TACGCACTGC TGTGCAGCTC TGCTCATTGC GGGAGGCTTC
  TGCCTCAGGG TTCTCTAGTT GAGGAGCTGA GGGACACTGC TGAAGATCAC TAGGAAGACT
  GGAGTCCACG TCCTCTCTGC TGACTTCCCC ACCTGCAGGA TGGAACGAGG CGGCACAGTG
  Y
  CCTGCCCAGG TGGTACTATA ACAGTGCCCT CAAGAGGTCC CACATCTCTT CACTGGACAA
  GATCAAGTCT CACTTTTTAT GTCTGCTGCC ACACAGGCAA CTGAACCAAT GGAAATGAAC
  TAAACGTCAC TGGAAGTCAG TGCTAGGAGA GGAGACATTT CAGTTTCTGT CACAGATGCC
  TAAAGCGAAA GCTCATTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39665002	mCV22976044	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147544924	ENSMUSSNP5630134	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30271315					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77060129 () rs orientation: forward

Symbol	Name	Function Class
Hdhd2	haloacid dehalogenase-like hydrolase domain containing 2	mRNA-UTR
Rr541071	regulatory region 541071	515 bp distal