rs30271254 SNP Detail

Summary

• ID
  rs30271254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18436802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGAGT CATTTGGGAA
  GAGGGAACCA GAACTGAGAA AGTATCCCCA CCAGACTGGC CTATGGCCTG TGGGGCATTT
  TTTCTTGATA GGATGATTCA TGTTGAATTA CCCAGCTTAA TGTGGGCAGT GCCACCCCTG
  GGCTCATGGC ACTGAGCAAG ACATGAGGAG CAAATCAGAA AGCAGCACCC TCCATGGCCT
  Y
  TGTATCAATC TCTACCTTCA GATTTCTGCC TTGCATTCCC GCACTGACCT CTTTAGATGA
  AAGTGTAAGC AACATAAACT CTTTCCTTTC CAAGTTGATT TTTGGTCGTG ATGTTTCATC
  TCAGCAGTAT AAATCCCTAG AACAAAAGGT GCCTGCCTTT TCCTCCATAG CAAAGCCCTC
  TCCTCTCCCG TGTTTTCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45910174	mCV23958655	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss133034805	ENSMUSSNP669934	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30271254					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18436802 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Gm67618	predicted gene, 67618			466 bp downstream
Rr626922	regulatory region 626922			1756 bp distal
Rr626924	regulatory region 626924			90 bp distal