rs30270787 SNP Detail

Summary

• ID
  rs30270787
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:77575822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT ATAGGTCAAC CATTTTTTTT
  W
  AAAAAATCAA GTCATAACAC AAGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45912762	mCV24109078	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
ss133319056	ENSMUSSNP84002	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		T
ss321830683	CHEV_6_77548833	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30270787					SNP	A	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:77575822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctnna2	catenin alpha 2			Intron
				mRNA-UTR
Gm38837	predicted gene, 38837			within coordinates
Rr632473	regulatory region 632473			583 bp proximal