rs30270647 SNP Detail

Summary

• ID
  rs30270647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72873378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG AGTTGGTCAG TCAGTCCCTG
  Y
  ACTTGCTCAG GACCCAGCAG AAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45912263	mCV22364459	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		C
ss51691866	NES14821471	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C		C	C	T	C		C	C	T	C		C
ss133287919	ENSMUSSNP6250204	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss321823137	CHEV_6_72846389	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30270647					SNP	T	T	T	T	T	T	C	T	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51691866	NES14821471	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72873378 () rs orientation: forward

Symbol	Name	Function Class
D530018E20Rik	RIKEN cDNA D530018E20 gene	476 bp upstream
Kcmf1	potassium channel modulatory factor 1	Intron
Rr632326	regulatory region 632326	1037 bp distal
Rr632327	regulatory region 632327	1871 bp proximal