rs30270556 SNP Detail

Summary

• ID
  rs30270556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65289666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTG GGACAAACTT AAAACAAATA
  R
  TAACAAAGAA CACATCCTAG TTCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45413655	mCV25091835	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss135250825	ENSMUSSNP96724	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30270556					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65289666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr577674	regulatory region 577674			1804 bp distal
Rr577675	regulatory region 577675			1894 bp distal
Ssr3	signal sequence receptor, gamma			Intron
				mRNA-UTR
Tssr33458	transcription start site region 33458			1924 bp upstream
Tssr33459	transcription start site region 33459			1452 bp upstream
Tssr33460	transcription start site region 33460			1297 bp upstream
Tssr33461	transcription start site region 33461			1188 bp upstream
Tssr33462	transcription start site region 33462			956 bp upstream
Tssr33463	transcription start site region 33463			845 bp upstream