rs30270136 SNP Detail

Summary

• ID
  rs30270136
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:115854773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTAGTCT GTCCTTAGAA
  AGTGAGGCCT CAGCTGGGCG TGGTGGCGCA CGCCTTTAAT CCCAGCACTC GGGAGGCAGA
  GGCAGGTAGA TTTCTGAGGT GAGGCCAGCC TGGTCTACAG AGTGAGTTCC AGGACAGCCA
  GGGCTACACA GAGAAACCCT GTCTCGAAAA ACAACAACAA CAAAAAAGCA ACCCCCCCCC
  M
  AAAAAAAGAA AGAAAGTGAG GCCTCTTCTC CACCTCCAGC AGCCAAGGGA GGCTAATCCT
  CTAAGTTGGC AGAAAGAGCT GGGCAGTGGT GGCACATGCT TTTAATCCTA GAGGTTGGGA
  GGCAGAGACA GGCAGATCTT TGTGAATTTG AGGCCAGCCT GGACTCCATA GTTCCAGAAC
  AACTGAAGCT ACACAGAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45910761	mCV24115537	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30270136					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115854773 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift122	intraflagellar transport 122			Intron
				Noncoding-Transcript-Variant
Rr637086	regulatory region 637086			956 bp proximal