rs30268223 SNP Detail

Summary

• ID
  rs30268223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108450245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCAGTGAT GTGTCAAAAG CATTATGGAA TTAGCAAGGC
  TGGGCTCTAC ATTCCGCCTA TCAAGAGACT GAGAGAGGAG ATGGTGGCTT TCTGGATTGT
  K
  TTTTCCAAGT GTACAGATCT CTCACAAAGG CGGGAATCTG GGCTTCTGGC TGGTATATAA
  GATATAGAAA ATAGAACTTC TGAGGATGTA GCAGTATTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45913336	mCV24650778	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		G
ss51813716	NES14768562	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	G	T	T	T	T	T	G	T
ss133503083	ENSMUSSNP7109002	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30268223					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813716	NES14768562	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108450245 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	678 bp upstream
Gm44101	predicted gene, 44101	709 bp upstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	1069 bp distal
Rr636116	regulatory region 636116	640 bp distal
Rr636117	regulatory region 636117	87 bp distal
Tssr58061	transcription start site region 58061	241 bp downstream
Tssr58062	transcription start site region 58062	202 bp downstream
Tssr58063	transcription start site region 58063	183 bp downstream
Tssr58064	transcription start site region 58064	156 bp downstream
Tssr62385	transcription start site region 62385	1620 bp upstream
Tssr62386	transcription start site region 62386	735 bp upstream