rs30266256 SNP Detail

Summary

• ID
  rs30266256
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86851034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGTTTT CTGTTCCCCT
  ATATTCTCTG CCCATGCTGC TTGTTGAATC TTGGGAGTGT GGAATGCTCA GATGTGGAGG
  GCCAGCTGTA CCTCCATGTT CTTGACTGCA CGCATGCACA GGTGGAGGAT GCCGCAGGGC
  TGCCTGTTGG CAGCTGCTGC TTCTCCTCCT CCTCCTTCTT TTTTTCTTTT TTTCTTTTTT
  W
  AATTTCTGGG ACAAGGTTTC TCGGTGTAGC CCTGGCTGTC CTGAAACTCA CTCTGTAAAC
  CAGGCTGGCC TCGAACTCAG AAATCTTCCT GCCTCTGCCT CCTAAGTGCT GGGATTAAAG
  GCGTTCGCCA CCACTGCCTG GCTGCCTGTT GGCTTCTTTT GCGTATGCTT AGTTGCATCA
  GGTGTTTTCC TCTCTCACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45913109	mCV24610048	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss133360226	ENSMUSSNP3380018	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30266256					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86851034 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Gm44152	predicted gene, 44152			within coordinates
Rr633548	regulatory region 633548			1921 bp distal
Rr633549	regulatory region 633549			860 bp proximal