rs30266202 SNP Detail

Summary

• ID
  rs30266202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146085526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAACACTG CAGTCCTGTT GATCTCTATC ACACCACTAA
  CCAGCTCTTC TGTCTGCTAT GGACTCATGT ACTTCCTGCT AAGTTAGTCT CGCTTTCAAA
  Y
  CTTCCTCCAT CCTTTCAGCT ATATACACAT CGATGACATT CCCAAGCCAT GTCTGAGAGC
  AAACAACTGG AAGGTTTGCT GGGGGAAAGG GGGGGGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45413240	mCV23541879	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss47026958	NES10844047	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	T	T		C	T	T	C		C
ss136043601	ENSMUSSNP6109540	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss321010084	CHEV_3_146042735	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30266202					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026958	NES10844047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146085526 () rs orientation: forward

Symbol	Name	Function Class
Gm10636	predicted gene 10636	827 bp upstream
Rr375875	regulatory region 375875	within coordinates
Rr587017	regulatory region 587017	within coordinates
Tssr36032	transcription start site region 36032	825 bp upstream