rs30265662 SNP Detail

Summary

• ID
  rs30265662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108583999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTCAAGG TTCATCTTAA GAATACCTCC CTAGGAAGCC
  ACTCCTAGTA CCCTACCCCC CTGGCTCTCT TCCTTTGGAA CCTTATCTAA CACCATCTTC
  Y
  TCCACCTCTT GCTCAGTGGT CTGATGGCCT TTCCAGTCTT GGCAGGCAGG GATAGTTTTA
  CTCACCTTTG CAACATCTGA CAGGGCAAAC ACACATTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45910417	mCV25345560	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss51811456	NES14765852	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	C	C	C	C	C	C	C
ss133505828	ENSMUSSNP6695016	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30265662					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51811456	NES14765852	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108583999 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
Gm67596	predicted gene, 67596	58 bp upstream
Rr636144	regulatory region 636144	487 bp distal
Rr636145	regulatory region 636145	904 bp proximal