rs30263319 SNP Detail

Summary

• ID
  rs30263319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58423347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCTTTATA ACCACTTTTA ATCCAATTTT TGTTTTATTT
  CTAAATTCCT AAAACAACTC TTCTTTTGAA TAAAAAATTC CAAACTAAAG GCTTCAAAAC
  R
  CAGAGAATGT AGAGTGATCA CTGAAATAAG TTAATTCAAA TGTATAGTCA AAGAGAAGTT
  CTATTTGTGA TTTAAAGAAA AAAAAACCTT ATCTATACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45412625	mCV24915832	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G	A
ss46981031	NES10792956	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	G	A		A	A	A		G
ss135207020	ENSMUSSNP6840683	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320783114	CHEV_3_58319848	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30263319					SNP	G	G	A	A	A	A	A	G	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981031	NES10792956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58423347 () rs orientation: forward

Symbol	Name	Function Class
Rr397679	regulatory region 397679	631 bp upstream
Rr397680	regulatory region 397680	1331 bp upstream
Rr577244	regulatory region 577244	287 bp proximal
Rr577245	regulatory region 577245	1584 bp proximal
Tssr29205	transcription start site region 29205	1562 bp upstream
Tssr29206	transcription start site region 29206	1611 bp upstream