rs30263213 SNP Detail

Summary

• ID
  rs30263213
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108234775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCAGGGATT GAACTCAGGT CCTCATGCTC TTGGCTATGC TATCTGAAGC AGCTTTATAT
  TTCCAATTAT ATAAAAAGTT TCTGTTTGTT TATTTATTTC TATAATTTTA GGCTGACTGA
  GTTCCACTAG CTTTTTCTGT CTGTTGGATC AAACATTGTT GAAAGTTGTT TAAGATTTTG
  TACTATTAAT TTTGGGGGAA TATGGAACTG CTCAACATCC TAATTGCAGT AGTGATGGCA
  TGGATTTATG TGTGTGCTCA GGTTCACAAA ACTATGGACC AAGCAAGACA GTGAATGGCC
  W
  ACACATAACA TTTGTAAAAA GTTAAATTTC AACAGTGGAT TATGTCAGTT TGCCCTACAG
  TTTGTTTTTT TTTTTTTTTT TTTGGTTTTT TTTTTTTAAT GTATAGGGAG GTTATACTAA
  TGCCTGATAA GACTGAAACT GTTTGTCATT GGGAAGGGCG TTTTTTGTTG TTGTTGTTGT
  TGTTGTTAAT GCTTTATATA CTAAAGCTTA TTTTGGCTTA TGCTAAATAA AACATTGGCA
  TCAACCCTTT TTGTATTTTT GTGGGTAAAA CTTAAATGGT CTGCCAGATT TTAGAAATAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45909594	mCV23137448	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30263213					SNP	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108234775 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636067	regulatory region 636067	1934 bp proximal
Tssr58057	transcription start site region 58057	96 bp upstream