rs30263093 SNP Detail

Summary

• ID
  rs30263093
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30069312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TAATTTAGCC
  ATAAATTGGA ATAGCTGGAG CTATGAGCTG TTCTATTTTC TTCCTGTCAG GATGAGAGAT
  TTGTTTTATG ATGCATTGTG TATTAAATAC AAGTAATCTG GGGAACTGAG TGCTTCAGAC
  ACTTCAGCTT GATCAGGGGG TCTGGGTGCT CAGTGCCCCA AACCATTCCA AGCCCCTACT
  Y
  CACCCCACCC TGGCCTTGCA GCACCCACTG CCTAACCTTT TTCAAAGCTT CTCAGAAAAG
  CAGGAAAGGT TGGTGGCGAC ACAAAGGTCC TGGGAAATCA GTGACAGGTC CTAACTAAAT
  TCACATTTCA GGGAAAAAAA AAAAAAAACC TTTGAGGTTT TTGTTGTTGT TGTTTGTTTT
  GTTTTGTTTT CTCCCCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45413507	mCV22689460	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss134728246	ENSMUSSNP6243746	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30263093					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30069312 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46			1559 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1			1438 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3			1688 bp distal
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574703	regulatory region 574703			1422 bp distal
Rr574704	regulatory region 574704			within coordinates
Rr574705	regulatory region 574705			265 bp proximal
Rr574706	regulatory region 574706			1468 bp proximal
Tssr32877	transcription start site region 32877			1989 bp upstream
Tssr32878	transcription start site region 32878			1917 bp upstream
Tssr32879	transcription start site region 32879			1903 bp upstream
Tssr32880	transcription start site region 32880			1823 bp upstream
Tssr32881	transcription start site region 32881			1794 bp upstream
Tssr32882	transcription start site region 32882			1764 bp upstream
Tssr32883	transcription start site region 32883			773 bp upstream