rs30262945 SNP Detail

Summary

• ID
  rs30262945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153365203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCAGCAA ATGTCACTCA
  GCACACCAGA CAAGTCCTGG AGCTCCCTAT GACCGGGTCA GTTATAATAT GTGGACGACA
  CTTGCACAAG CCTGCCTGCT ACAGCCTAGG TAGCCACAGG TGACAAGTGG AGAACAGAGA
  GGATGCAGAT CAGGCAGGGC AAGAAGGGCT AGCCCAGTCA GGACGATGCT TACCTTGCGA
  R
  CATACGGGGC GGAATTCATC CCCAGAGCAT ATTACTAATG TGATGGACCT TTGTTACCAA
  AGAACTGTAC TTAGAAAAGG AAACAAACTT CAGAGAAATA AAAATCCCAG CAACAGCCCC
  TGGAGTATAG GAGGCCCCGC CACAAGGCTC GTGAAGAAGT GGAACAGAGG CCTCAGCACA
  GTCCACTCAG TCCACTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45413386	mCV24207552	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss136110573	ENSMUSSNP5956362	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30262945					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153365203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			706 bp distal
Rr587720	regulatory region 587720			973 bp distal
Rr587721	regulatory region 587721			105 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant