rs30262107 SNP Detail

Summary

• ID
  rs30262107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121516791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCTCAAA TTCTCTCAGG
  CTTCATGTTG CAGTTCCTCG GTCACCTCGG GAACGGGAGT GGGGTGCCAA GTGGCCTTTA
  GACCTAATCC AGGGCCCTTG TCCATGGCAG ACACGTGCAT TTACTGCACC GCCCTGTGCA
  GCGGACCAAA GGGACTGACA GAATGATCTG CTAGCCACTG CGTGTTCAGG CAGGGCTTTG
  R
  AACTGCCCTC TGCTACCAGG AGTGGTCCAG GGGCTTTGAT ACATCCTCTG CTAGGGCCTC
  AGCGTACATC GAAAGCAGAG GAAAAGTAAG ACTCCCTTGA CTTTCAACTT AAGTCCCTTC
  AATGACACTC CTTTCTCCCC AGCCAGCCAC CCAGGCTGGT CATCCAGGGA TCAGCCCGGG
  AGCCTGGGTC TCCGCAGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ
ss46930119	NES10689869	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ
rs30262107					SNP	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46930119	NES10689869	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121516791 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	within coordinates
F3	coagulation factor III, tissue factor	395 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584148	regulatory region 584148	1223 bp distal
Rr584149	regulatory region 584149	within coordinates
Rr584150	regulatory region 584150	397 bp distal
Rr584151	regulatory region 584151	362 bp proximal
Rr584152	regulatory region 584152	406 bp proximal
Rr584153	regulatory region 584153	578 bp proximal
Rr584154	regulatory region 584154	590 bp proximal
Tssr31453	transcription start site region 31453	373 bp upstream
Tssr31454	transcription start site region 31454	414 bp upstream
Tssr31455	transcription start site region 31455	438 bp upstream
Tssr31456	transcription start site region 31456	459 bp upstream
Tssr31457	transcription start site region 31457	1669 bp upstream
Tssr35426	transcription start site region 35426	253 bp downstream